TSS: Rfhg 158800.1: Difference between revisions

Revision as of 08:50, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_158800.1
Species:	human
Chr:	chr13

Start:	23160103
End:	23160110
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2630228,EH38E1659936)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001378244.1:398
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SGCG
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-20815
Nearest PromoterID:	NM_000231
Entrez ID:	6445
Nearest Unigene:	Hs.37167
Nearest Refseq:	NM_000231
Nearest Ensembl:	ENSG00000102683
Gene Name:	SGCG
Gene Alias:	35DAG\|A4\|DAGA4\|DMDA\|DMDA1\|LGMD2C\|LGMDR5\|MAM\|SCARMD2\|SCG3\|gamma-SG
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000102683
 |nearest_promoter_id=NM_000231
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=23160103