TSS: Rfhg 159882.1: Difference between revisions

Revision as of 09:11, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_159882.1
Species:	human
Chr:	chr13

Start:	40771142
End:	40771214
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2645404,EH38E1670384)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000323563.8:0 BC022045:0 AK315248:0 BC010159:0
GeneID:	10240
HGNC/MGI_ID:	HGNC:16632
UniProt_ID:	Q92665
Nearer transcript ids and distances:

Gene_name:	MRPS31
Gene_symbol:	MRPS31
Gene_synonyms:	IMOGN38
Gene_source:	HGNC:16632

TATA-Box annotation

Distance to TSS:	12
Nearest PromoterID:	NM_005830
Entrez ID:	10240
Nearest Unigene:	Hs.596607
Nearest Refseq:	NM_005830
Nearest Ensembl:	ENSG00000102738
Gene Name:	MRPS31
Gene Alias:	IMOGN38\|MRP-S31\|S31mt
Gene Type:	protein-coding
CpG%:	0.069444
GC%:	0.547945
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16632
+|methods=TIF-seq2{{!}}oligo_capping{{!}}CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}NETCAGE{{!}}STRIPE-seq{{!}}C1CAGE
 |nearest_ensembl=ENSG00000102738
 |nearest_promoter_id=NM_005830
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJDB5282
 |species=human
 |start=40771142
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000323563.8 BC022045 AK315248 BC010159
-|tss_cluster_detected=14
+|tss_cluster_detected=11
 |tss_id=rfhg_159882.1
 |tss_score=1
 |uniprot_id=Q92665
 }}