TSS: Rfhg 159997.1: Difference between revisions

Revision as of 09:13, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_159997.1
Species:	human
Chr:	chr13

Start:	41961079
End:	41961123
Strand:	-

Source datasets

PRJNA4843412|DRA013844|PRJNA401781|PRJNA615891

Protocol

NETCAGE|CAGE|SLIC_CAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2646432,EH38E1671140)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000379310.8:0 ENST00000281496.6:0 BC053674:0
GeneID:	23078
HGNC/MGI_ID:	HGNC:29071
UniProt_ID:	A3KMH1
Nearer transcript ids and distances:

Gene_name:	VWA8
Gene_symbol:	VWA8
Gene_synonyms:	P7BP2
Gene_source:	HGNC:29071

TATA-Box annotation

Distance to TSS:	8
Nearest PromoterID:	NM_015058
Entrez ID:	23078
Nearest Unigene:	Hs.368282
Nearest Refseq:	NM_015058
Nearest Ensembl:	ENSG00000102763
Gene Name:	VWA8
Gene Alias:	KIAA0564\|P7BP2
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.688889
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:29071
+|methods=NETCAGE{{!}}CAGE{{!}}SLIC_CAGE
 |nearest_ensembl=ENSG00000102763
 |nearest_promoter_id=NM_015058
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA615891
 |species=human
 |start=41961079
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000379310.8 ENST00000281496.6 BC053674
-|tss_cluster_detected=6
+|tss_cluster_detected=4
 |tss_id=rfhg_159997.1
 |tss_score=1
 |uniprot_id=A3KMH1
 }}