TSS: Rfhg 160014.1: Difference between revisions

Revision as of 09:13, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_160014.1
Species:	human
Chr:	chr13

Start:	42272014
End:	42272077
Strand:	+

Source datasets

FANTOM5|DRA000914

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2646702,EH38E1671311)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF210174:-9 MA445751:-9
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	AKAP11
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-107
Nearest PromoterID:	NM_016248
Entrez ID:	11215
Nearest Unigene:	Hs.105105
Nearest Refseq:	NM_016248
Nearest Ensembl:	ENSG00000023516
Gene Name:	AKAP11
Gene Alias:	AKAP-11\|AKAP220\|PPP1R44\|PRKA11
Gene Type:	protein-coding
CpG%:	0.174603
GC%:	0.796875
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000023516
 |nearest_promoter_id=NM_016248
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914
 |species=human
 |start=42272014