TSS: Hg 102974.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=19908 |entrez_id=28 |gc_percent=0.522388 |gene_alias=A3GALNT|A3GALT1|GTB|NAGAT |gene_description="ABO, alpha 1-3-N-acetylgalact...") |
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{{TSSDetail | {{TSSDetail | ||
|A3GALT1= | |||
|GTB= | |||
|NAGAT= | |||
|all_trans=AK124587:-151 U15197:-343 S44054:-354 | |||
|chr=chr9 | |||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=-151 | |||
|distance_to_tss=19908 | |distance_to_tss=19908 | ||
|end=133255338 | |||
|entrez_id=28 | |entrez_id=28 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_020469 | |nearest_refseq=NM_020469 | ||
|nearest_unigene=Hs.654423 | |nearest_unigene=Hs.654423 | ||
|num_trans=3 | |||
|species=human | |||
|start=133255274 | |||
|strand=- | |||
|transcript_name=AK124587 | |||
|tss_classification=yes | |||
|tss_id=hg_102974.1 | |tss_id=hg_102974.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 19908 |
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| Nearest PromoterID: | NM_020469 |
| Entrez ID: | 28 |
| Nearest Unigene: | Hs.654423 |
| Nearest Refseq: | NM_020469 |
| Nearest Ensembl: | ENSG00000175164 |
| Gene Name: | ABO |
| Gene Alias: | A3GALNT |
| Gene Description: | "ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase" |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |