TSS: Rfhg 16307.1: Difference between revisions

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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:52432
|hgnc_mgi_id=HGNC:52432
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_126001
|nearest_promoter_id=NR_126001
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=177351576
|start=177351576

Revision as of 10:09, 7 December 2023

Basic information about the TSS

TSS ID:rfhg_16307.1
Species:human
Chr:chr1
Start:177351576
End:177351585
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D2244299,EH38E1400252)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000666721.1:0
GeneID:
HGNC/MGI_ID:HGNC:52432
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LINC01645
    Gene_symbol:LINC01645
    Gene_synonyms:
    Gene_source:HGNC:52432



    TATA-Box annotation

    Distance to TSS:-6
    Nearest PromoterID:NR_126001
    Entrez ID:102724661
    Nearest Unigene:Hs.146628
    Nearest Refseq:NR_126001
    Nearest Ensembl:
    Gene Name:LINC01645
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.700000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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