TSS: Rfhg 163141.1: Difference between revisions

Revision as of 10:10, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_163141.1
Species:	human
Chr:	chr13

Start:	114045481
End:	114045519
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2696842,EH38E1700477)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RASA3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	32455
Nearest PromoterID:	NM_001320822
Entrez ID:	22821
Nearest Unigene:	Hs.593075
Nearest Refseq:	NM_007368
Nearest Ensembl:	ENSG00000185989
Gene Name:	RASA3
Gene Alias:	GAP1IP4BP\|GAPIII
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.564103
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000185989
 |nearest_promoter_id=NM_001320822
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=114045481