TSS: Rfhg 163751.1: Difference between revisions

Revision as of 10:21, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_163751.1
TSS ID(Version3):	hg_138675.1 hg_138674.1 hg_138673.1
Species:	human
Chr:	chr14

Start:	22168349
End:	22168402
Strand:	+

Source datasets

FANTOM5|PRJNA4843412

Protocol

CAGE|NETCAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2698924,EH38E1701981)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AB977086:0 AB976736:0 AB977040:0 AB977472:0 AB749904:0 AB749850:0 AB749878:0 AB749880:0 AB749894:0 AB749870:0 AB749866:0 AB305717:0 X58768:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC105370401
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	264378
Nearest PromoterID:	NR_148363
Entrez ID:	105370401
Nearest Unigene:	Hs.435144
Nearest Refseq:	NR_148361
Nearest Ensembl:
Gene Name:	LOC105370401
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.481481
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE{{!}}NETCAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_148363
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412
 |species=human
 |start=22168349
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=AB977086 AB976736 AB977040 AB977472 AB749904 AB749850 AB749878 AB749880 AB749894 AB749870 AB749866 AB305717 X58768
+|tss_cluster_detected=2
 |tss_id=rfhg_163751.1
 |tss_id_v3=hg_138675.1;hg_138674.1;hg_138673.1