TSS: Rfhg 163881.1: Difference between revisions

Revision as of 10:23, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_163881.1
Species:	human
Chr:	chr14

Start:	22531858
End:	22531924
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2699324,EH38E1702326)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	X60138:0 X04943:0 X60139:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC02332
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	25171
Nearest PromoterID:	NR_146543
Entrez ID:	105370400
Nearest Unigene:
Nearest Refseq:	NR_146543
Nearest Ensembl:	ENSG00000259054
Gene Name:	LINC02332
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.432836
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000259054
 |nearest_promoter_id=NR_146543
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=22531858