TSS: Hg 103017.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-11 |entrez_id=389827 |gc_percent=0.631841 |gene_alias=MYOMAKER|TMEM226 |gene_description=transmembrane protein 8C |gene_name=TM...") |
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{{TSSDetail | {{TSSDetail | ||
|TMEM226= | |||
|all_trans=ENST00000339996.3:4 NM_001080483:4 uc011mdk.2:4 | |||
|chr=chr9 | |||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=4 | |||
|distance_to_tss=-11 | |distance_to_tss=-11 | ||
|end=133524965 | |||
|entrez_id=389827 | |entrez_id=389827 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=MYOMAKER|TMEM226 | |gene_alias=MYOMAKER|TMEM226 | ||
|gene_description=transmembrane protein 8C | |gene_description=transmembrane protein 8C | ||
|gene_name=TMEM8C | |gene_id=389827 | ||
|gene_name=transmembrane protein 8C | |||
|gene_source=HGNC:33778 | |||
|gene_symbol=TMEM8C | |||
|gene_synonyms=TMEM226 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:33778 | |||
|nearest_ensembl=ENSG00000187616 | |nearest_ensembl=ENSG00000187616 | ||
|nearest_promoter_id=NM_001080483 | |nearest_promoter_id=NM_001080483 | ||
|nearest_refseq=NM_001080483 | |nearest_refseq=NM_001080483 | ||
|nearest_unigene=Hs.512467 | |nearest_unigene=Hs.512467 | ||
|num_trans=3 | |||
|species=human | |||
|start=133524949 | |||
|strand=- | |||
|tata_box="-33(GCATTTAAACCC,+,0.00)" | |tata_box="-33(GCATTTAAACCC,+,0.00)" | ||
|transcript_name=ENST00000339996.3 NM_001080483 uc011mdk.2 | |||
|tss_classification=no | |||
|tss_id=hg_103017.1 | |tss_id=hg_103017.1 | ||
|tss_score=1 | |||
|uniprot_id=A6NI61 | |||
}} | }} | ||
Revision as of 19:51, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -11 |
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| Nearest PromoterID: | NM_001080483 |
| Entrez ID: | 389827 |
| Nearest Unigene: | Hs.512467 |
| Nearest Refseq: | NM_001080483 |
| Nearest Ensembl: | ENSG00000187616 |
| Gene Name: | transmembrane protein 8C |
| Gene Alias: | MYOMAKER |
| Gene Description: | transmembrane protein 8C |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GCATTTAAACCC,+,0.00)" |
TSS expression
Expression data not found.