TSS: Rfhg 169464.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:20218
|hgnc_mgi_id=HGNC:20218
|methods=CAGE
|nearest_ensembl=ENSG00000153485
|nearest_ensembl=ENSG00000153485
|nearest_promoter_id=NM_015676
|nearest_promoter_id=NM_015676
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=93185232
|start=93185232

Revision as of 12:07, 7 December 2023

Basic information about the TSS


TSS ID:rfhg_169464.1
Species:human
Chr:chr14
Start:93185232
End:93185242
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D2752888,EH38E1737601)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000415050.3:75
GeneID:26175
HGNC/MGI_ID:HGNC:20218
UniProt_ID:Q8N6I4
Nearer transcript ids and distances:
    Gene_name:TMEM251
    Gene_symbol:LYSET
    Gene_synonyms:DKFZP564F1123 GCAF
    Gene_source:HGNC:20218



    TATA-Box annotation


    Distance to TSS:263
    Nearest PromoterID:NM_015676
    Entrez ID:26175
    Nearest Unigene:Hs.275352
    Nearest Refseq:NM_015676
    Nearest Ensembl:ENSG00000153485
    Gene Name:TMEM251
    Gene Alias:C14orf109
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.636364
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.