TSS: Rfhg 169466.1: Difference between revisions

Revision as of 12:07, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_169466.1
Species:	human
Chr:	chr14

Start:	93185305
End:	93185325
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2752888,EH38E1737601)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000415050.3:0
GeneID:	26175
HGNC/MGI_ID:	HGNC:20218
UniProt_ID:	Q8N6I4
Nearer transcript ids and distances:

Gene_name:	TMEM251
Gene_symbol:	LYSET
Gene_synonyms:	DKFZP564F1123 GCAF
Gene_source:	HGNC:20218

TATA-Box annotation

Distance to TSS:	341
Nearest PromoterID:	NM_015676
Entrez ID:	26175
Nearest Unigene:	Hs.275352
Nearest Refseq:	NM_015676
Nearest Ensembl:	ENSG00000153485
Gene Name:	TMEM251
Gene Alias:	C14orf109
Gene Type:	protein-coding
CpG%:	0.050000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:20218
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000153485
 |nearest_promoter_id=NM_015676
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=93185305
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000415050.3
-|tss_cluster_detected=3
+|tss_cluster_detected=2
 |tss_id=rfhg_169466.1
 |tss_score=1
 |uniprot_id=Q8N6I4
 }}