TSS: Rfhg 170992.1: Difference between revisions

Revision as of 12:35, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_170992.1
Species:	human
Chr:	chr14

Start:	105249540
End:	105249540
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2765593,EH38E1746601)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000446501.6:136 AK096471:136
GeneID:	2972
HGNC/MGI_ID:	HGNC:1107 HGNC:11551
UniProt_ID:	Q92994
Nearer transcript ids and distances:

Gene_name:	BRF1
Gene_symbol:	BRF1 ZFP36L1
Gene_synonyms:	BRF Berg36 ERF1 RNF162B TFIIIB90 TIS11B cMG1 hBRF
Gene_source:	HGNC:1107 HGNC:11551

TATA-Box annotation

Distance to TSS:	-136
Nearest PromoterID:	NM_001242789
Entrez ID:	2972
Nearest Unigene:	Hs.424484
Nearest Refseq:	NM_001519
Nearest Ensembl:	ENSG00000185024
Gene Name:	BRF1
Gene Alias:	BRF\|BRF-1\|CFDS\|GTF3B\|HEL-S-76p\|TAF3B2\|TAF3C\|TAFIII90\|TF3B90\|TFIIIB90\|hBRF
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:1107 HGNC:11551
+|methods=TSS_database
 |nearest_ensembl=ENSG00000185024
 |nearest_promoter_id=NM_001242789
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=105249540