TSS: Rfhg 171562.1: Difference between revisions

Revision as of 12:44, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_171562.1
Species:	human
Chr:	chr15

Start:	24955066
End:	24955066
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2768295,EH38E1748362)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AB590506:-21
GeneID:	8926
HGNC/MGI_ID:	HGNC:11171
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SNRPN
Gene_symbol:	SNURF
Gene_synonyms:
Gene_source:	HGNC:11171

TATA-Box annotation

Distance to TSS:	74
Nearest PromoterID:	NM_001349464
Entrez ID:	6638
Nearest Unigene:	Hs.564847
Nearest Refseq:	NM_003097
Nearest Ensembl:	ENSG00000128739
Gene Name:	SNRPN
Gene Alias:	HCERN3\|PWCR\|RT-LI\|SM-D\|SMN\|SNRNP-N\|SNURF-SNRPN\|sm-N
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:11171
+|methods=CAGE
 |nearest_ensembl=ENSG00000128739
 |nearest_promoter_id=NM_001349464
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=24955066