TSS: Rfhg 171984.1: Difference between revisions

Revision as of 12:51, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_171984.1
TSS ID(Version3):	hg_145695.1
Species:	human
Chr:	chr15

Start:	32615472
End:	32615534
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2773038,EH38E1751284)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000361627.8:0 D87717:0
GeneID:	9824
HGNC/MGI_ID:	HGNC:15783
UniProt_ID:	Q6P4F7
Nearer transcript ids and distances:

Gene_name:	ARHGAP11A
Gene_symbol:	ARHGAP11A
Gene_synonyms:	KIAA0013
Gene_source:	HGNC:15783

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_001286480
Entrez ID:	9824
Nearest Unigene:	Hs.591130
Nearest Refseq:	NM_014783
Nearest Ensembl:	ENSG00000198826
Gene Name:	ARHGAP11A
Gene Alias:	GAP (1-12)
Gene Type:	protein-coding
CpG%:	0.048387
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:15783
+|methods=CAGE{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}STRIPE-seq{{!}}oligo_capping{{!}}C1CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000198826
 |nearest_promoter_id=NM_001286480
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJDB5282
 |species=human
 |start=32615472
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000361627.8 D87717
+|tss_cluster_detected=13
 |tss_id=rfhg_171984.1
 |tss_id_v3=hg_145695.1