TSS: Rfhg 172659.1: Difference between revisions

Revision as of 13:02, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_172659.1
Species:	human
Chr:	chr15

Start:	39595504
End:	39595504
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2778792,EH38E1755156)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF348759:-24 MA584336:-24
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	THBS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	14425
Nearest PromoterID:	NM_003246
Entrez ID:	7057
Nearest Unigene:	Hs.164226
Nearest Refseq:	NM_003246
Nearest Ensembl:	ENSG00000137801
Gene Name:	THBS1
Gene Alias:	THBS\|THBS-1\|TSP\|TSP-1\|TSP1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000137801
 |nearest_promoter_id=NM_003246
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=39595504