TSS: Rfhg 172793.1: Difference between revisions

Revision as of 13:04, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_172793.1
Species:	human
Chr:	chr15

Start:	40283029
End:	40283070
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2779567,EH38E1755754)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000434396.2:0
GeneID:	100131244
HGNC/MGI_ID:	HGNC:40027
UniProt_ID:	C9JTQ0
Nearer transcript ids and distances:

Gene_name:	ANKRD63
Gene_symbol:	ANKRD63
Gene_synonyms:
Gene_source:	HGNC:40027

TATA-Box annotation

Distance to TSS:	-463
Nearest PromoterID:	NM_001190479
Entrez ID:	100131244
Nearest Unigene:	Hs.711376
Nearest Refseq:	NM_001190479
Nearest Ensembl:	ENSG00000230778
Gene Name:	ANKRD63
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.097561
GC%:	0.785714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:40027
+|methods=CAGE
 |nearest_ensembl=ENSG00000230778
 |nearest_promoter_id=NM_001190479
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=40283029