TSS: Rfhg 17492.1: Difference between revisions

Revision as of 13:43, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_17492.1
Species:	human
Chr:	chr1

Start:	193059550
End:	193059563
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2256058,EH38E1407864)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF205380:31 MA440957:31
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	UCHL5
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-46
Nearest PromoterID:	NM_001350847
Entrez ID:	51377
Nearest Unigene:	Hs.145469
Nearest Refseq:	NM_015984
Nearest Ensembl:	ENSG00000116750
Gene Name:	UCHL5
Gene Alias:	CGI-70\|INO80R\|UCH-L5\|UCH37
Gene Type:	protein-coding
CpG%:	0.076923
GC%:	0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000116750
 |nearest_promoter_id=NM_001350847
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=193059550