TSS: Rfhg 176458.1: Difference between revisions

Revision as of 14:12, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_176458.1
Species:	human
Chr:	chr15

Start:	74461260
End:	74461270
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2809920,EH38E1777703)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000564137.5:0 ENST00000499217.6:0 BC014373:0
GeneID:	440288
HGNC/MGI_ID:	HGNC:48614
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	UBL7-AS1
Gene_symbol:	UBL7-DT
Gene_synonyms:
Gene_source:	HGNC:48614

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NR_038448
Entrez ID:	440288
Nearest Unigene:	Hs.611046
Nearest Refseq:	NR_038448
Nearest Ensembl:	ENSG00000247240
Gene Name:	UBL7-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.100000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:48614
+|methods=CAGE
 |nearest_ensembl=ENSG00000247240
 |nearest_promoter_id=NR_038448
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=74461260