TSS: Rfhg 177900.1: Difference between revisions

Revision as of 14:40, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_177900.1
Species:	human
Chr:	chr15

Start:	89335065
End:	89335113
Strand:	+

Source datasets

PRJNA548673

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2822783,EH38E1786566)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC031940:-9
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	POLG
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-265
Nearest PromoterID:	NM_001126131
Entrez ID:	5428
Nearest Unigene:	Hs.706868
Nearest Refseq:	NM_002693
Nearest Ensembl:	ENSG00000140521
Gene Name:	POLG
Gene Alias:	MDP1\|MIRAS\|MTDPS4A\|MTDPS4B\|PEO\|POLG1\|POLGA\|SANDO\|SCAE
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.591837
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000140521
 |nearest_promoter_id=NM_001126131
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=89335065