TSS: Rfhg 179023.1: Difference between revisions

Revision as of 14:59, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_179023.1
Species:	human
Chr:	chr15

Start:	101168362
End:	101168371
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2833435,EH38E1793777)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000557903.5:159
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CHSY1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	83682
Nearest PromoterID:	NM_014918
Entrez ID:	22856
Nearest Unigene:	Hs.110488
Nearest Refseq:	NM_014918
Nearest Ensembl:	ENSG00000131873
Gene Name:	CHSY1
Gene Alias:	CHSY\|CSS1\|ChSy-1\|TPBS
Gene Type:	protein-coding
CpG%:	0.111111
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000131873
 |nearest_promoter_id=NM_014918
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=101168362