TSS: Rfhg 179337.1: Difference between revisions

Revision as of 15:05, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_179337.1
Species:	human
Chr:	chr16

Start:	694121
End:	694144
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2835051,EH38E1794989)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF340803:118 MA576380:118
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	WDR24
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-3734
Nearest PromoterID:	NM_032259
Entrez ID:	84219
Nearest Unigene:	Hs.459632
Nearest Refseq:	NM_032259
Nearest Ensembl:	ENSG00000127580
Gene Name:	WDR24
Gene Alias:	C16orf21\|JFP7
Gene Type:	protein-coding
CpG%:	0.086957
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000127580
 |nearest_promoter_id=NM_032259
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=694121