TSS: Rfhg 179969.1: Difference between revisions

Revision as of 15:16, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_179969.1
TSS ID(Version3):	hg_152297.1
Species:	human
Chr:	chr16

Start:	2767542
End:	2767728
Strand:	+

Source datasets

FANTOM5|PRJDB5282

Protocol

CAGE|C1CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000572883.1:0 AK025903:0
GeneID:	23524
HGNC/MGI_ID:	HGNC:16639
UniProt_ID:	I3L3Q8
Nearer transcript ids and distances:

Gene_name:	ELOB
Gene_symbol:	SRRM2
Gene_synonyms:	Cwc21 KIAA0324 SRL300 SRm300
Gene_source:	HGNC:16639

TATA-Box annotation

Distance to TSS:	9645
Nearest PromoterID:	NM_007108
Entrez ID:	6923
Nearest Unigene:	Hs.172772
Nearest Refseq:	NM_007108
Nearest Ensembl:	ENSG00000103363
Gene Name:	ELOB
Gene Alias:	SIII\|TCEB2
Gene Type:	protein-coding
CpG%:	0.048387
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16639
+|methods=CAGE{{!}}C1CAGE
 |nearest_ensembl=ENSG00000103363
 |nearest_promoter_id=NM_007108
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJDB5282
 |species=human
 |start=2767542
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000572883.1 AK025903
+|tss_cluster_detected=2
 |tss_id=rfhg_179969.1
 |tss_id_v3=hg_152297.1