TSS: Rfhg 183803.1: Difference between revisions

Revision as of 16:26, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_183803.1
Species:	human
Chr:	chr16

Start:	35506111
End:	35506117
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2860169,EH38E1812567)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000669868.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TP53TG3HP
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1056
Nearest PromoterID:	NR_034018
Entrez ID:	100130700
Nearest Unigene:	Hs.97712
Nearest Refseq:	NR_034018
Nearest Ensembl:
Gene Name:	TP53TG3HP
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=pseudo
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_034018
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=35506111