TSS: Rfhg 184376.1: Difference between revisions

Revision as of 16:36, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_184376.1
Species:	human
Chr:	chr16

Start:	55479286
End:	55479286
Strand:	+

Source datasets

DRA013844

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2867796,EH38E1817405)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF373563:11 MA609140:11
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MMP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	88
Nearest PromoterID:	NM_004530
Entrez ID:	4313
Nearest Unigene:	Hs.513617
Nearest Refseq:	NM_004530
Nearest Ensembl:	ENSG00000087245
Gene Name:	MMP2
Gene Alias:	CLG4\|CLG4A\|MMP-2\|MMP-II\|MONA\|TBE-1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000087245
 |nearest_promoter_id=NM_004530
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA013844
 |species=human
 |start=55479286