TSS: Rfhg 185677.1: Difference between revisions

Latest revision as of 17:01, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_185677.1
Species:	human
Chr:	chr16

Start:	68645291
End:	68645350
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2878074,EH38E1824006)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000542274.5 ENST00000264012.9 AK296968 AK312554 AK225396 X63629
Distance:	0
GeneID:	1001
HGNC/MGI_ID:	HGNC:1754 HGNC:1762
UniProt_ID:	B4DLF0 J3QR34 P22223

Gene_name:	CDH3
Gene_symbol:	CDH15 CDH3
Gene_synonyms:	CDHP PCAD
Gene_source:	HGNC:1754 HGNC:1762

TATA-Box annotation

Distance to TSS:	10
Nearest PromoterID:	NM_001793
Entrez ID:	1001
Nearest Unigene:	Hs.191842
Nearest Refseq:	NM_001793
Nearest Ensembl:	ENSG00000062038
Gene Name:	CDH3
Gene Alias:	CDHP\|HJMD\|PCAD
Gene Description:	cadherin 3
Gene Type:	protein-coding
CpG%:	0.135593
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:1754 HGNC:1762
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000062038
 |nearest_promoter_id=NM_001793
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=68645291
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000542274.5 ENST00000264012.9 AK296968 AK312554 AK225396 X63629
-|tss_cluster_detected=3
+|tss_cluster_detected=2
 |tss_id=rfhg_185677.1
 |tss_score=1
 |uniprot_id=B4DLF0 J3QR34 P22223
 }}