TSS: Rfhg 187545.1: Difference between revisions

Revision as of 17:34, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_187545.1
TSS ID(Version3):	hg_155563.1
Species:	human
Chr:	chr16

Start:	88857068
End:	88857153
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

14

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2897170,EH38E1837528)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000567895.5:0 ENST00000301021.7:0 ENST00000625770.2:0 ENST00000564547.1:0 ENST00000562792.1:0 ENST00000565504.5:0 ENST00000565205.5:0 ENST00000567312.5:0 ENST00000568583.5:0 ENST00000564404.5:0 AF089106:0 AK311885:0 BC105809:0 AK126779:0 AF161524:0 AK310805:0 BC018024:0 BC011369:0
GeneID:	51693
HGNC/MGI_ID:	HGNC:30887
UniProt_ID:	A0A0B4J286 A0A0B4J294 H3BP13 H3BPE0 H3BPN3 H3BUK6 Q9UL33
Nearer transcript ids and distances:

Gene_name:	TRAPPC2L
Gene_symbol:	TRAPPC2L
Gene_synonyms:	HSPC176
Gene_source:	HGNC:30887

TATA-Box annotation

Distance to TSS:	-17
Nearest PromoterID:	NM_001318530
Entrez ID:	51693
Nearest Unigene:	Hs.461722
Nearest Refseq:	NM_016209
Nearest Ensembl:	ENSG00000167515
Gene Name:	TRAPPC2L
Gene Alias:	HSPC176\|PERRB
Gene Type:	protein-coding
CpG%:	0.129412
GC%:	0.732558
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:30887
+|methods=CAGE{{!}}TSS_database{{!}}C1CAGE{{!}}NETCAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}STRIPE-seq
 |nearest_ensembl=ENSG00000167515
 |nearest_promoter_id=NM_001318530
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA597322
 |species=human
 |start=88857068
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000567895.5 ENST00000301021.7 ENST00000625770.2 ENST00000564547.1 ENST00000562792.1 ENST00000565504.5 ENST00000565205.5 ENST00000567312.5 ENST00000568583.5 ENST00000564404.5 AF089106 AK311885 BC105809 AK126779 AF161524 AK310805 BC018024 BC011369
+|tss_cluster_detected=14
 |tss_id=rfhg_187545.1
 |tss_id_v3=hg_155563.1