TSS: Rfhg 18882.1: Difference between revisions

Revision as of 17:59, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_18882.1
Species:	human
Chr:	chr1

Start:	206203805
End:	206203805
Strand:	-

Source datasets

PRJNA597322

Protocol

STRIPE-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000367129.6:-260
GeneID:	729533
HGNC/MGI_ID:	HGNC:24044
UniProt_ID:	Q5TYM6
Nearer transcript ids and distances:

Gene_name:	FAM72A
Gene_symbol:	FAM72A
Gene_synonyms:	LMPIP MGC57827 RP11-312O7.1 UGENE p17
Gene_source:	HGNC:24044

TATA-Box annotation

Distance to TSS:	260
Nearest PromoterID:	NM_001317901
Entrez ID:	729533
Nearest Unigene:	Hs.339665
Nearest Refseq:	NM_001123168
Nearest Ensembl:	ENSG00000196550
Gene Name:	FAM72A
Gene Alias:	LMPIP\|Ugene\|p17
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:24044
+|methods=STRIPE-seq
 |nearest_ensembl=ENSG00000196550
 |nearest_promoter_id=NM_001317901
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA597322
 |species=human
 |start=206203805