TSS: Rfhg 188828.1: Difference between revisions

Revision as of 17:59, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_188828.1
Species:	human
Chr:	chr17

Start:	5500206
End:	5500214
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2904074,EH38E1843142)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ904347:-109
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC728392
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	796
Nearest PromoterID:	NM_001162371
Entrez ID:	728392
Nearest Unigene:	Hs.104305
Nearest Refseq:	NM_001162371
Nearest Ensembl:	ENSG00000286190
Gene Name:	LOC728392
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000286190
 |nearest_promoter_id=NM_001162371
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=5500206