TSS: Rfhg 189379.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=NETCAGE | |||
|nearest_ensembl=ENSG00000129194 | |nearest_ensembl=ENSG00000129194 | ||
|nearest_promoter_id=NM_006942 | |nearest_promoter_id=NM_006942 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412 | |||
|species=human | |species=human | ||
|start=7590805 | |start=7590805 | ||
Latest revision as of 18:10, 7 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | PRJNA4843412 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2906098,EH38E1844539) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -721 |
|---|---|
| Nearest PromoterID: | NM_006942 |
| Entrez ID: | 6665 |
| Nearest Unigene: | Hs.95582 |
| Nearest Refseq: | NM_006942 |
| Nearest Ensembl: | ENSG00000129194 |
| Gene Name: | SOX15 |
| Gene Alias: | SOX20|SOX26|SOX27 |
| Gene Description: | SRY-box transcription factor 15 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |