TSS: Rfhg 190736.1: Difference between revisions

Revision as of 18:34, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_190736.1
Species:	human
Chr:	chr17

Start:	19283052
End:	19283052
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000571254.1:-5 BC093972:-5 BC093974:-5 BC143263:-5 BC143264:-5
GeneID:	22905
HGNC/MGI_ID:	HGNC:18639
UniProt_ID:	B7ZKM5 I3L2B2
Nearer transcript ids and distances:

Gene_name:	EPN2-IT1
Gene_symbol:	EPN2
Gene_synonyms:	EHB21 KIAA1065
Gene_source:	HGNC:18639

TATA-Box annotation

Distance to TSS:	11659
Nearest PromoterID:	NR_046824
Entrez ID:	100874309
Nearest Unigene:	Hs.733657
Nearest Refseq:	NR_046824
Nearest Ensembl:
Gene Name:	EPN2-IT1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:18639
+|methods=TSS_database
 |nearest_ensembl=
 |nearest_promoter_id=NR_046824
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=19283052