TSS: Rfhg 192316.1: Difference between revisions

Revision as of 19:03, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_192316.1
Species:	human
Chr:	chr17

Start:	36103820
End:	36103837
Strand:	+

Source datasets

FANTOM5|EPD|DRA000914|RAMPAGE

Protocol

CAGE|TSS_database|RAMPAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2926516,EH38E1858793)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000615863.2:0 ENST00000621626.1:0 AY766446:0 AY766448:0 J04130:0 M23502:0 BC107433:0
GeneID:	6351
HGNC/MGI_ID:	HGNC:10630
UniProt_ID:	P13236 Q7M4M2
Nearer transcript ids and distances:

Gene_name:	CCL4L2
Gene_symbol:	CCL4
Gene_synonyms:	AT744.1 Act-2 MIP-1-beta
Gene_source:	HGNC:10630

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_001291474
Entrez ID:	9560
Nearest Unigene:	Hs.515183
Nearest Refseq:	NM_001001435
Nearest Ensembl:	ENSG00000276070
Gene Name:	CCL4L2
Gene Alias:	AT744.2\|CCL4L\|SCYA4L\|SCYQ4L2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:10630
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE
 |nearest_ensembl=ENSG00000276070
 |nearest_promoter_id=NM_001291474
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}RAMPAGE
 |species=human
 |start=36103820