TSS: Rfhg 192711.1: Difference between revisions

Revision as of 19:10, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_192711.1
Species:	human
Chr:	chr17

Start:	39046110
End:	39046112
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2928901,EH38E1860547)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RDM1P5
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-10908
Nearest PromoterID:	NR_036551
Entrez ID:	100131347
Nearest Unigene:	Hs.676510
Nearest Refseq:	NR_036551
Nearest Ensembl:	ENSG00000263818
Gene Name:	RDM1P5
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.500000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=pseudo
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000263818
 |nearest_promoter_id=NR_036551
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=39046110