TSS: Rfhg 196560.1: Difference between revisions

Revision as of 20:24, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_196560.1
Species:	human
Chr:	chr17

Start:	58692011
End:	58692020
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2947366,EH38E1874332)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000583666.2:0 BC040526:0 AK308299:0
GeneID:	56155
HGNC/MGI_ID:	HGNC:11737 HGNC:43611
UniProt_ID:	A0A1W2PR95
Nearer transcript ids and distances:

Gene_name:	TEX14
Gene_symbol:	IGBP1C TEX14
Gene_synonyms:	CT113
Gene_source:	HGNC:11737 HGNC:43611

TATA-Box annotation

Distance to TSS:	40
Nearest PromoterID:	NM_031272
Entrez ID:	56155
Nearest Unigene:	Hs.390221
Nearest Refseq:	NM_031272
Nearest Ensembl:	ENSG00000121101
Gene Name:	TEX14
Gene Alias:	CT113\|SPGF23
Gene Type:	protein-coding
CpG%:	0.222222
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:11737 HGNC:43611
+|methods=CAGE
 |nearest_ensembl=ENSG00000121101
 |nearest_promoter_id=NM_031272
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=58692011