TSS: Rfhg 196813.1: Difference between revisions

Revision as of 20:28, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_196813.1
Species:	human
Chr:	chr17

Start:	60392493
End:	60392514
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000461535.1:-64
GeneID:	124773
HGNC/MGI_ID:	HGNC:26990
UniProt_ID:	A0A0G2JLI9
Nearer transcript ids and distances:

Gene_name:	USP32
Gene_symbol:	CHCT1
Gene_synonyms:
Gene_source:	HGNC:26990

TATA-Box annotation

Distance to TSS:	-370
Nearest PromoterID:	NM_032582
Entrez ID:	84669
Nearest Unigene:	Hs.132868
Nearest Refseq:	NM_032582
Nearest Ensembl:	ENSG00000170832
Gene Name:	USP32
Gene Alias:	NY-REN-60\|USP10
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.681818
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:26990
+|methods=CAGE
 |nearest_ensembl=ENSG00000170832
 |nearest_promoter_id=NM_032582
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=60392493