TSS: Rfhg 196820.1: Difference between revisions

Revision as of 20:28, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_196820.1
Species:	human
Chr:	chr17

Start:	60422514
End:	60422530
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2948774,EH38E1875455)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC048806:-2
GeneID:	124773
HGNC/MGI_ID:	HGNC:26990
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	C17orf64
Gene_symbol:	CHCT1
Gene_synonyms:
Gene_source:	HGNC:26990

TATA-Box annotation

Distance to TSS:	33
Nearest PromoterID:	NM_181707
Entrez ID:	124773
Nearest Unigene:	Hs.129312
Nearest Refseq:	NM_181707
Nearest Ensembl:	ENSG00000141371
Gene Name:	C17orf64
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.529412
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:26990
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000141371
 |nearest_promoter_id=NM_181707
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=60422514