TSS: Rfhg 197050.1: Difference between revisions

Revision as of 20:32, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_197050.1
Species:	human
Chr:	chr17

Start:	62966430
End:	62966508
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2950958,EH38E1877108)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_025185.4:-195 NM_001394998.1:-195
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TANC2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	234
Nearest PromoterID:	NM_025185
Entrez ID:	26115
Nearest Unigene:	Hs.410889
Nearest Refseq:	NM_015623
Nearest Ensembl:	ENSG00000170921
Gene Name:	TANC2
Gene Alias:	ROLSA\|rols
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.797468
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000170921
 |nearest_promoter_id=NM_025185
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=62966430
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=NM_025185.4 NM_001394998.1
-|tss_cluster_detected=3
+|tss_cluster_detected=2
 |tss_id=rfhg_197050.1
 |tss_score=1
 |uniprot_id=
 }}