TSS: Rfhg 197448.1: Difference between revisions

Revision as of 20:40, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_197448.1
Species:	human
Chr:	chr17

Start:	65014370
End:	65014370
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2953069,EH38E1878811)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	CU691409:-112
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	AMZ2P1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-38785
Nearest PromoterID:	NR_026903
Entrez ID:	201283
Nearest Unigene:	Hs.396447
Nearest Refseq:	NM_153032
Nearest Ensembl:	ENSG00000214174
Gene Name:	AMZ2P1
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=pseudo
 |hgnc_mgi_id=
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000214174
 |nearest_promoter_id=NR_026903
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=65014370