TSS: Rfhg 199215.1: Difference between revisions

Revision as of 21:13, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_199215.1
Species:	human
Chr:	chr17

Start:	78187380
End:	78187390
Strand:	-

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000588734.5:147
GeneID:	7083
HGNC/MGI_ID:	HGNC:11830
UniProt_ID:	K7ERV3
Nearer transcript ids and distances:

Gene_name:	AFMID
Gene_symbol:	TK1
Gene_synonyms:
Gene_source:	HGNC:11830

TATA-Box annotation

Distance to TSS:	68
Nearest PromoterID:	NR_027083
Entrez ID:	125061
Nearest Unigene:	Hs.558614
Nearest Refseq:	NM_001010982
Nearest Ensembl:	ENSG00000183077
Gene Name:	AFMID
Gene Alias:	FKF\|KF\|KFA
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:11830
+|methods=CAGE
 |nearest_ensembl=ENSG00000183077
 |nearest_promoter_id=NR_027083
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE
 |species=human
 |start=78187380