TSS: Rfhg 20382.1: Difference between revisions

Revision as of 22:39, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_20382.1
TSS ID(Version3):	hg_8789.1
Species:	human
Chr:	chr1

Start:	224356806
End:	224356821
Strand:	+

Source datasets

FANTOM5|PRJNA401781|PRJNA615891

Protocol

CAGE|RAMPAGE|oligo_capping|SLIC_CAGE|TIF-seq2

TSS cluster detected^*

6

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2282809,EH38E1426446)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LP895164:25
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CNIH4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-66
Nearest PromoterID:	NM_001277198
Entrez ID:	29097
Nearest Unigene:	Hs.445890
Nearest Refseq:	NM_014184
Nearest Ensembl:	ENSG00000143771
Gene Name:	CNIH4
Gene Alias:	CNIH-4\|CNIH2\|HSPC163
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}SLIC_CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000143771
 |nearest_promoter_id=NM_001277198
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA401781{{!}}PRJNA615891
 |species=human
 |start=224356806