TSS: Rfhg 20406.1: Difference between revisions

Revision as of 22:43, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_20406.1
Species:	human
Chr:	chr1

Start:	224544560
End:	224544615
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2282988,EH38E1426598)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CNIH3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-71730
Nearest PromoterID:	NM_152495
Entrez ID:	149111
Nearest Unigene:	Hs.731723
Nearest Refseq:	NM_152495
Nearest Ensembl:	ENSG00000143786
Gene Name:	CNIH3
Gene Alias:	CNIH-3
Gene Type:	protein-coding
CpG%:	0.018182
GC%:	0.410714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=NETCAGE
 |nearest_ensembl=ENSG00000143786
 |nearest_promoter_id=NM_152495
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412
 |species=human
 |start=224544560