TSS: Rfhg 207221.1: Difference between revisions

Revision as of 23:43, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_207221.1
TSS ID(Version3):	hg_237875.1
Species:	human
Chr:	chr19

Start:	9251070
End:	9251104
Strand:	+

Source datasets

EPD|PRJNA4843412

Protocol

TSS_database|NETCAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC156695:-26
GeneID:	26648
HGNC/MGI_ID:	HGNC:8396
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	OR7E24
Gene_symbol:	OR7E24
Gene_synonyms:	HSHT2 OR19-8 OR7E24Q
Gene_source:	HGNC:8396

TATA-Box annotation

Distance to TSS:	43
Nearest PromoterID:	NM_001079935
Entrez ID:	26648
Nearest Unigene:	Hs.129832
Nearest Refseq:	NM_001079935
Nearest Ensembl:	ENSG00000237521
Gene Name:	OR7E24
Gene Alias:	HSHT2\|OR19-8\|OR7E24P\|OR7E24Q
Gene Type:	protein-coding
CpG%:	0.029412
GC%:	0.457143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:8396
+|methods=TSS_database{{!}}NETCAGE
 |nearest_ensembl=ENSG00000237521
 |nearest_promoter_id=NM_001079935
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD{{!}}PRJNA4843412
 |species=human
 |start=9251070
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BC156695
+|tss_cluster_detected=2
 |tss_id=rfhg_207221.1
 |tss_id_v3=hg_237875.1