TSS: Rfhg 207233.1: Difference between revisions

Revision as of 23:43, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_207233.1
Species:	human
Chr:	chr19

Start:	9363001
End:	9363036
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3039917,EH38E1937639)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000683217.1:0 ENST00000343499.8:0 ENST00000592912.5:0 U37263:0
GeneID:	100529215 7730
HGNC/MGI_ID:	HGNC:12966 HGNC:42964
UniProt_ID:	K7EQU1 Q13360
Nearer transcript ids and distances:

Gene_name:	ZNF177
Gene_symbol:	ZNF177 ZNF559-ZNF177
Gene_synonyms:
Gene_source:	HGNC:12966 HGNC:42964

TATA-Box annotation

Distance to TSS:	5
Nearest PromoterID:	NM_003451
Entrez ID:	7730
Nearest Unigene:	Hs.728944
Nearest Refseq:	NM_003451
Nearest Ensembl:	ENSG00000188629
Gene Name:	ZNF177
Gene Alias:	PIGX
Gene Type:	protein-coding
CpG%:	0.114286
GC%:	0.638889
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:12966 HGNC:42964
+|methods=CAGE
 |nearest_ensembl=ENSG00000188629
 |nearest_promoter_id=NM_003451
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=9363001