TSS: Rfhg 207421.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000105371
|nearest_ensembl=ENSG00000105371
|nearest_promoter_id=NM_001544
|nearest_promoter_id=NM_001544
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=10286474
|start=10286474

Revision as of 23:47, 7 December 2023

Basic information about the TSS


TSS ID:rfhg_207421.1
Species:human
Chr:chr19
Start:10286474
End:10286507
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS (EH38D3040552,EH38E1938146)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF375768:-436
MA611345:-436
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:ICAM4
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-465
    Nearest PromoterID:NM_001544
    Entrez ID:3386
    Nearest Unigene:Hs.706750
    Nearest Refseq:NM_001544
    Nearest Ensembl:ENSG00000105371
    Gene Name:ICAM4
    Gene Alias:CD242|LW
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.617647
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):