TSS: Rfhg 208043.1: Difference between revisions

Revision as of 23:59, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_208043.1
Species:	human
Chr:	chr19

Start:	12792648
End:	12792666
Strand:	+

Source datasets

PRJNA401781

Protocol

oligo_capping

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3042702,EH38E1939945)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	JUNB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1171
Nearest PromoterID:	NM_002229
Entrez ID:	3726
Nearest Unigene:	Hs.25292
Nearest Refseq:	NM_002229
Nearest Ensembl:	ENSG00000171223
Gene Name:	JUNB
Gene Alias:	AP-1
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=oligo_capping
 |nearest_ensembl=ENSG00000171223
 |nearest_promoter_id=NM_002229
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=12792648