TSS: Rfhg 210565.1: Difference between revisions

Revision as of 00:43, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_210565.1
Species:	human
Chr:	chr19

Start:	33302806
End:	33302857
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3056247,EH38E1949613)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000592982.2:0
GeneID:	80054
HGNC/MGI_ID:	HGNC:25710
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CEBPA-DT
Gene_symbol:	CEBPA-DT
Gene_synonyms:	ADINR
Gene_source:	HGNC:25710

TATA-Box annotation

Distance to TSS:	10
Nearest PromoterID:	NR_026887
Entrez ID:	80054
Nearest Unigene:	Hs.287521
Nearest Refseq:	NR_026887
Nearest Ensembl:	ENSG00000267296
Gene Name:	CEBPA-DT
Gene Alias:	CEBPA-AS1
Gene Type:	ncRNA
CpG%:	0.078431
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:25710
+|methods=CAGE
 |nearest_ensembl=ENSG00000267296
 |nearest_promoter_id=NR_026887
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=33302806