TSS: Rfhg 210759.1: Difference between revisions

Revision as of 00:46, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_210759.1
Species:	human
Chr:	chr19

Start:	35000298
End:	35000302
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3057622,EH38E1950532)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000600959.1:128
GeneID:
HGNC/MGI_ID:	HGNC:55275
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GRAMD1A
Gene_symbol:	GRAMD1A-AS1
Gene_synonyms:
Gene_source:	HGNC:55275

TATA-Box annotation

Distance to TSS:	-23
Nearest PromoterID:	NM_001320035
Entrez ID:	57655
Nearest Unigene:	Hs.515351
Nearest Refseq:	NM_020895
Nearest Ensembl:	ENSG00000089351
Gene Name:	GRAMD1A
Gene Alias:	KIAA1533
Gene Type:	protein-coding
CpG%:	0.500000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:55275
+|methods=CAGE
 |nearest_ensembl=ENSG00000089351
 |nearest_promoter_id=NM_001320035
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=35000298