TSS: Rfhg 213608.1: Difference between revisions

Revision as of 01:41, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_213608.1
Species:	human
Chr:	chr19

Start:	45668207
End:	45668241
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3066479,EH38E1957693)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000652180.1:0 ENST00000590918.6:0
GeneID:	2696
HGNC/MGI_ID:	HGNC:4271
UniProt_ID:	A0A494C077 P48546
Nearer transcript ids and distances:

Gene_name:	GIPR
Gene_symbol:	GIPR
Gene_synonyms:
Gene_source:	HGNC:4271

TATA-Box annotation

Distance to TSS:	3
Nearest PromoterID:	NM_000164
Entrez ID:	2696
Nearest Unigene:	Hs.251412
Nearest Refseq:	NM_000164
Nearest Ensembl:	ENSG00000010310
Gene Name:	GIPR
Gene Alias:	PGQTL2
Gene Type:	protein-coding
CpG%:	0.029412
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:4271
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000010310
 |nearest_promoter_id=NM_000164
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=45668207
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000652180.1 ENST00000590918.6
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_213608.1
 |tss_score=1
 |uniprot_id=A0A494C077 P48546
 }}