TSS: Rfhg 214308.1: Difference between revisions

Revision as of 01:54, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_214308.1
Species:	human
Chr:	chr19

Start:	48455568
End:	48455605
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000342291.3:0
GeneID:	3770
HGNC/MGI_ID:	HGNC:6260
UniProt_ID:	Q9UNX9
Nearer transcript ids and distances:

Gene_name:	KCNJ14
Gene_symbol:	KCNJ14
Gene_synonyms:	IRK4 Kir2.4
Gene_source:	HGNC:6260

TATA-Box annotation

Distance to TSS:	-121
Nearest PromoterID:	NM_013348
Entrez ID:	3770
Nearest Unigene:	Hs.144011
Nearest Refseq:	NM_013348
Nearest Ensembl:	ENSG00000182324
Gene Name:	KCNJ14
Gene Alias:	IRK4\|KIR2.4
Gene Type:	protein-coding
CpG%:	0.027027
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:6260
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000182324
 |nearest_promoter_id=NM_013348
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=48455568