TSS: Rfhg 214625.1: Difference between revisions

Revision as of 02:00, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_214625.1
Species:	human
Chr:	chr19

Start:	49057731
End:	49057754
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3069936,EH38E1960550)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000684222.1:0 ENST00000596965.5:0 AK092722:0 AK310581:0
GeneID:	94027
HGNC/MGI_ID:	HGNC:16451
UniProt_ID:	A0A0F7RQF0
Nearer transcript ids and distances:

Gene_name:	CGB7
Gene_symbol:	CGB7
Gene_synonyms:	CG-beta-a
Gene_source:	HGNC:16451

TATA-Box annotation

Distance to TSS:	-2002
Nearest PromoterID:	NM_033142
Entrez ID:	94027
Nearest Unigene:	Hs.681647
Nearest Refseq:	NM_033142
Nearest Ensembl:	ENSG00000196337
Gene Name:	CGB7
Gene Alias:	CG-beta-a\|CGB6
Gene Type:	protein-coding
CpG%:	0.043478
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16451
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000196337
 |nearest_promoter_id=NM_033142
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=49057731